The Western European house mouse is chromosomally diverse, with diploid karyotypes ranging from the standard 40 telocentric chromosomes down to 22 chromosomes. Karyotypes are modified through Robertsonian (Rb) fusion of 2 telocentrics into a single metacentric, occurring repeatedly with fixation, and whole-arm reciprocal translocations (WARTs) generating additional novel karyotypes. Over 100 metacentric populations (chromosomal races) have been identified, geographically clustered into “systems.” Chromosomal races within systems often hybridise, and new races may emerge through this hybridisation (“zonal raciation”). We wished to determine the degree to which chromosomal races in a system have evolved independently or share common ancestry. Recombination between chromosomes from hybridising chromosomal races can erase the signals associated with a particular metacentric of interest, making inferences challenging. However, reduced recombination near the centromeres of chromosomal race-specific metacentrics makes centromere-adjacent markers ideal for solving this problem. For the Northern Italy System (NIS), we used microsatellite markers near the centromere to test previous hypotheses about evolutionary relationships of 5 chromosomal races. We chose markers from chromosomes 1, 3, 4, and 6, all of which comprise one arm of a metacentric in at least 2 of these NIS metacentric populations. We used estimates of FST and RST, as well as principal components analyses and neighbour-joining phylogenetic analyses, to infer evolutionary relationships between these 5 chromosomal races and neighbouring mice with the standard karyotype. We showed that the metacentric populations form a single grouping distinct from the standard populations, consistent with their common origin and consistent with a parsimonious sequence of chromosomal rearrangements to explain the relationship of the chromosomal races. That origin and evolution of the chromosomal races in the system would have involved Rb fusions, explaining the occurrence of chromosomal races with diploid numbers as low as 22. However, WARTs and zonal raciation have also been inferred, and the rare occurrence of chromosome 1 in different metacentrics in closely related chromosomal races is almost certainly explained by a WART. Our results with centromeric microsatellites are consistent with the above scenarios, illustrating, once again, the value of markers in the centromeric region to test evolutionary hypotheses in house mouse chromosomal systems.

1.
Angers
B
,
Bernatchez
L
.
Combined use of SMM and non-SMM methods to infer fine structure and evolutionary history of closely related brook charr (Salvelinus fontinalis, Salmonidae) populations from microsatellites
.
Mol Biol Evol
.
1998
;
15
(
2
):
143
59
.
2.
Balloux
F
,
Lugon‐Moulin
N
.
The estimation of population differentiation with microsatellite markers
.
Mol Ecol
.
2002
;
11
(
2
):
155
65
.
3.
Britton-Davidian
J
,
Catalan
J
,
da Graça Ramalhinho
M
,
Auffray
JC
,
Claudia Nunes
A
,
Gazave
E
,
Chromosomal phylogeny of Robertsonian races of the house mouse on the island of Madeira: testing between alternative mutational processes
.
Genet Res
.
2005
;
86
(
3
):
171
83
.
4.
Bult
CJ
,
Blake
JA
,
Smith
CL
,
Kadin
JA
,
Richardson
JE
,
Mouse Genome Database Group
.
Mouse Genome Database (MGD) 2019
.
Nucleic Acids Res
.
2019
;
47
(
D1
):
D801
6
.
5.
Capanna
E
,
Corti
M
.
Reproductive isolation between two chromosomal races of Mus musculus in the Rhaetian Alps (northern Italy)
.
Mammalia
.
1982
;
46
:
107
9
.
6.
Capanna
E
,
Redi
CA
.
Whole-arm reciprocal translocation (WART) between Robertsonian chromosomes: finding of a Robertsonian heterozygous mouse with karyotype derived through WARTs
.
Chromosome Res
.
1995
;
3
(
2
):
135
7
.
7.
Capanna
E
,
Civitelli
MV
,
Cristaldi
M
.
Una popolazione appenninica di Mus musculus L. caratterizzata da un cariotipo a 22 cromosomi
.
Rend Fis Acc Lincei, S VIII
.
1973
;
54
:
981
4
.
8.
Capanna
E
,
Gropp
A
,
Winking
H
,
Noack
G
,
Civitelli
MV
.
Robertsonian metacentrics in the mouse
.
Chromosoma
.
1976
;
58
(
4
):
341
53
.
9.
Castiglia
R
,
Capanna
E
.
Whole-arm reciprocal translocation (WART) in a feral population of mice
.
Chromosome Res
.
1999
;
7
(
6
):
493
5
.
10.
Castiglia
R
,
Capanna
E
,
Bezerra
AMR
,
Bizzoco
D
,
Zambigli
E
,
Solano
E
.
New metacentric populations and phylogenetic hypotheses involving whole-arm reciprocal translocation in Mus musculus domesticus from Sicily
.
Cytogenet Genome Res
.
2015
;
146
(
3
):
230
7
.
11.
Catalan
J
,
Auffray
J-C
,
Pellestor
F
,
Britton-Davidian
J
.
Spontaneous occurrence of a Robertsonian fusion involving chromosome 19 by single whole-arm reciprocal translocation (WART) in wild-derived house mice
.
Chromosome Res
.
2000
;
8
(
7
):
593
601
.
12.
Cavalli-Sforza
LL
,
Edwards
AWF
.
Phylogenetic analysis: models and estimation procedures
.
Evolution
.
1967
;
32
:
550
70
. [Also published in Am J Hum Genet. 1967;19:233–57.]
13.
Corti
M
,
Capanna
E
,
Estabrook
GF
.
Microevolutionary sequences in house mouse chromosomal speciation
.
Syst Zool
.
1986
;
35
(
2
):
163
75
.
14.
Crocker
M
,
Cattanach
BM
.
X-ray induction of translocations in mice carrying metacentrics (Robertsonian fusions); Detection of whole arm chromosome exchanges
.
Mutat Res
.
1981
;
91
(
4-5
):
353
7
.
15.
Cucchi
T
,
Vigne
JD
,
Auffray
JC
.
First occurrence of the house mouse (Mus musculus domesticus Schwarz & Schwarz, 1943) in the Western Mediterranean: a zooarchaeological revision of subfossil occurrences
.
Biol J Linn Soc
.
2005
;
84
(
3
):
429
45
.
16.
Davisson
MT
,
Akeson
EC
.
Recombination suppression by heterozygous Robertsonian chromosomes in the mouse
.
Genetics
.
1993
;
133
(
3
):
649
67
.
17.
Dray
S
,
Dufour
AB
.
The ade4 package: implementing the duality diagram for ecologists
.
J Stat Softw
.
2007
;
22
(
4
):
1
20
.
18.
Dumas
D
,
Catalan
J
,
Britton-Davidian
J
.
Reduced recombination patterns in Robertsonian hybrids between chromosomal races of the house mouse: chiasma analyses
.
Heredity
.
2015
;
114
(
1
):
56
64
.
19.
Evans
EP
.
Karyotyping and sexing of gametes, embryos and fetuses and in situ hybridization to chromosomes
. In:
Monk
M
, editor.
Mammalian development: a practical approach
.
IRL Press
;
1987
. p.
93
114
.
20.
Förster
DW
,
Mathias
ML
,
Britton-Davidian
J
,
Searle
JB
.
Origin of the chromosomal radiation of Madeiran house mice: a microsatellite analysis of metacentric chromosomes
.
Heredity
.
2013
;
110
(
4
):
380
8
.
21.
Förster
DW
,
Jones
EP
,
Jóhannesdóttir
F
,
Gabriel
SI
,
Giménez
MD
,
Panithanarak
T
,
Genetic differentiation within and away from the chromosomal rearrangements characterising hybridising chromosomal races of the western house mouse (Mus musculus domesticus)
.
Chromosome Res
.
2016
;
24
(
2
):
271
80
.
22.
Fraguedakis-Tsolis
S
,
Hauffe
HC
,
Searle
JB
.
Genetic distinctiveness of a village population of house mice: relevance to speciation and chromosomal evolution
.
Proc Biol Sci
.
1997
;
264
(
1380
):
355
60
.
23.
Franchini
P
,
Colangelo
P
,
Solano
E
,
Capanna
E
,
Verheyen
E
,
Castiglia
R
.
Reduced gene flow at pericentromeric loci in a hybrid zone involving chromosomal races of the house mouse Mus musculus domesticus
.
Evolution
.
2010
;
64
(
7
):
2020
32
.
24.
Franchini
P
,
Kautt
AF
,
Nater
A
,
Antonini
G
,
Castiglia
R
,
Meyer
A
,
Reconstructing the evolutionary history of chromosomal races on islands: a genome-wide analysis of natural house mouse populations
.
Mol Biol Evol
.
2020
;
37
(
10
):
2825
37
.
25.
Garagna
S
,
Page
J
,
Fernandez-Donoso
R
,
Zuccotti
M
,
Searle
JB
.
The Robertsonian phenomenon in the house mouse: mutation, meiosis and speciation
.
Chromosoma
.
2014
;
123
(
6
):
529
44
.
26.
Garnier
S
,
Ross
N
,
Rudis
R
,
Camargo
AP
,
Sciaini
M
,
Scherer
C
.
Rvision - Colorblind-Friendly Color Maps for R. R package, version 0.6.2
.
2021
.
27.
Garza
JC
,
Freimer
NB
.
Homoplasy for size at microsatellite loci in humans and chimpanzees
.
Genome Res
.
1996
;
6
(
3
):
211
7
.
28.
Gascuel
O
.
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
.
Mol Biol Evol
.
1997
;
14
(
7
):
685
95
.
29.
Giménez
MD
,
White
TA
,
Hauffe
HC
,
Panithanarak
T
,
Searle
JB
.
Understanding the basis of diminished gene flow between hybridizing chromosome races of the house mouse
.
Evolution
.
2013
;
67
(
5
):
1446
62
.
30.
Giménez
MD
,
Panithanarak
T
,
Hauffe
HC
,
Searle
JB
.
Empirical demonstration of hybrid chromosomal races in house mice
.
Evolution
.
2016
;
70
(
7
):
1651
8
.
31.
Giménez
MD
,
Förster
DW
,
Jones
EP
,
Jóhannesdóttir
F
,
Gabriel
SI
,
Panithanarak
T
,
A half-century of studies on a chromosomal hybrid zone of the house mouse
.
J Hered
.
2017
;
108
(
1
):
25
35
.
32.
Goldstein
DB
,
Pollock
DD
.
Launching microsatellites: a review of mutation processes and methods of phylogenetic interference
.
J Hered
.
1997
;
88
(
5
):
335
42
.
33.
Goudet
J
,
Jombart
T
.
hierfstat: Estimation and Tests of Hierarchical F-Statistics. R package version 0.5-10
.
2021
. https://CRAN.R-project.org/package=hierfstat
34.
Gropp
A
,
Tettenborn
U
,
von Lehmann
E
.
Chromosomenuntersuchungen bei der Tabakmaus (M. poschiavinus) und bei Tabakmaus-Hybriden
.
Experientia
.
1969
;
25
(
8
):
875
6
.
35.
Gropp
A
,
Winking
H
,
Redi
C
,
Capanna
E
,
Britton-Davidian
J
,
Noack
G
.
Robertsonian karyotype variation in wild house mice from Rhaeto-Lombardia
.
Cytogenet Cell Genet
.
1982
;
34
(
1-2
):
67
77
.
36.
Hauffe
HC
,
Panithanarak
T
,
Dallas
JF
,
Piálek
J
,
Gündüz
I
,
Searle
JB
.
The tobacco mouse and its relatives: a ‘tail’ of coat colors, chromosomes, hybridization and speciation
.
Cytogenet Genome Res
.
2004
;
105
:
395
405
. .
37.
Hauffe
HC
,
Piálek
J
.
Evolution of the chromosomal races of Mus musculus domesticus in the Rhaetian Alps: the roles of whole-arm reciprocal translocation and zonal raciation
.
Biol J Linn Soc
.
1997
;
62
(
2
):
255
78
.
38.
Hauffe
HC
,
Giménez
MD
,
Searle
JB
.
Chromosomal hybrid zones in the house mouse
. In:
Macholán
M
,
Baird
SJE
,
Munclinger
P
,
Piálek
J
, editors.
Evolution of the house mouse
.
Cambridge University Press
;
2012
. p.
407
30
.
39.
Jombart
T
.
adegenet: a R package for the multivariate analysis of genetic markers
.
Bioinformatics
.
2008
;
24
(
11
):
1403
5
.
40.
Jombart
T
,
Ahmed
I
.
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
.
Bioinformatics
.
2011
;
27
(
21
):
3070
1
.
41.
Merico
V
,
Pigozzi
MI
,
Esposito
A
,
Merani
MS
,
Garagna
S
.
Meiotic recombination and spermatogenic impairment in Mus musculus domesticus carrying multiple simple Robertsonian translocations
.
Cytogenet Genome Res
.
2003
;
103
(
3-4
):
321
9
.
42.
Michalakis
Y
,
Excoffier
L
.
A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci
.
Genetics
.
1996
;
142
(
3
):
1061
4
.
43.
Montgelard
C
,
Catalan
J
,
Britton-Davidian
J
.
Is increased chromosomal diversity in house mice from Lombardy (Italy) congruent with genic divergence?
Biol J Linn Soc
.
2016
;
118
(
2
):
245
61
.
44.
Morgan
AP
,
Hughes
JJ
,
Didion
JP
,
Jolley
WJ
,
Campbell
KJ
,
Threadgill
DW
,
Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales
.
Heredity
.
2022
;
129
(
3
):
183
94
. .
45.
Panithanarak
T
,
Hauffe
HC
,
Dallas
JF
,
Glover
A
,
Ward
RG
,
Searle
JB
.
Linkage-dependent gene flow in a house mouse chromosomal hybrid zone
.
Evolution
.
2004
;
58
(
1
):
184
92
. .
46.
Paradis
E
,
Schliep
K
.
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
.
Bioinformatics
.
2019
;
35
(
3
):
526
8
.
47.
Pavlova
SV
,
Searle
JB
.
Chromosomes and speciation in mammals
. In:
Zachos
FE
,
Asher
RJ
, editors.
Mammalian evolution, diversity and systematics
.
De Gruyter
;
2018
. p.
17
38
.
48.
Piálek
J
,
Hauffe
HC
,
Rodríguez-Clark
KM
,
Searle
JB
.
Raciation and speciation in house mice from the Alps: the role of chromosomes
.
Mol Ecol
.
2001
;
10
(
3
):
613
25
.
49.
Piálek
J
,
Hauffe
HC
,
Searle
JB
.
Chromosomal variation in the house mouse
.
Biol J Linn Soc
.
2005
;
84
(
3
):
535
63
. .
50.
R Core Team
.
R: A language and environment for statistical computing
.
Vienna
:
R Foundation for Statistical Computing
;
2021
. https://www.R-project.org/
51.
Riginos
C
,
Nachman
MW
.
The origin of a Robertsonian chromosomal translocation in house mice inferred from linked microsatellite markers
.
Mol Biol Evol
.
1999
;
16
(
12
):
1763
73
.
52.
Rousset
F
.
genepop’007: a complete re-implementation of the genepop software for Windows and Linux
.
Mol Ecol Resour
.
2008
;
8
(
1
):
103
6
.
53.
Sage
RD
,
Atchley
WR
,
Capanna
E
.
House mice as models in systematic biology
.
Syst Biol
.
1993
;
42
(
4
):
523
61
.
54.
Savary
P
,
Foltête
JC
,
Moal
H
,
Vuidel
G
,
Garnier
S
.
graph4lg: a package for constructing and analysing graphs for landscape genetics in R
.
Methods Ecol Evol
.
2021
;
12
(
3
):
539
47
.
55.
Searle
JB
.
Chromosomal hybrid zones in eutherian mammals
. In:
Harrison
RG
, editor.
Hybrid zones and the evolutionary process
.
Oxford University Press
;
1993
. p.
309
53
.
56.
Takezaki
N
,
Nei
M
.
Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
.
Genetics
.
1996
;
144
(
1
):
389
99
.
57.
Vara
C
,
Paytuví-Gallart
A
,
Cuartero
Y
,
Álvarez-González
L
,
Marín-Gual
L
,
Garcia
F
,
The impact of chromosomal fusions on 3D genome folding and recombination in the germ line
.
Nat Commun
.
2021
;
12
(
1
):
2981
.
58.
Weir
BS
,
Cockerham
CC
.
Estimating F-statistics for the analysis of population structure
.
Evolution
.
1984
;
38
(
6
):
1358
70
.
59.
White
TA
,
Bordewich
M
,
Searle
JB
.
A network approach to study karyotypic evolution: the chromosomal races of the common shrew (Sorex araneus) and house mouse (Mus musculus) as model systems
.
Syst Biol
.
2010
;
59
(
3
):
262
76
.
60.
Wickham
H
.
ggplot2: elegant graphics for data analysis
.
New York
:
Springer-Verlag
;
2016
.
61.
Zeisek
V
,
Paradis
E
.
Re: [R-sig-phylo] Problems with bootstraps of NJ tree from SSRs data
.
2014
. https://www.mail-archive.com/r-sig-phylo@ r-project.org/msg03123.html. Accessed: 2022-02-07.
Copyright / Drug Dosage / Disclaimer
Copyright: All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means, electronic or mechanical, including photocopying, recording, microcopying, or by any information storage and retrieval system, without permission in writing from the publisher.
Drug Dosage: The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any changes in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug.
Disclaimer: The statements, opinions and data contained in this publication are solely those of the individual authors and contributors and not of the publishers and the editor(s). The appearance of advertisements or/and product references in the publication is not a warranty, endorsement, or approval of the products or services advertised or of their effectiveness, quality or safety. The publisher and the editor(s) disclaim responsibility for any injury to persons or property resulting from any ideas, methods, instructions or products referred to in the content or advertisements.
You do not currently have access to this content.