Lampbrush chromosomes are giant, transcriptionally active, meiotic chromosomes found in oocytes of all vertebrates with the exception of mammals. Lampbrush chromosomes offer a convenient tool for cytogenetic mapping and, in particular, have been instrumental in mapping genes and linkage groups on chicken (GGA) chromosomes. Whereas cytogenetic maps of macrochromosome GGA1-10 and microchromosome GGA11-16 lampbrush bivalents have been established, identification and description of smaller microchromosome bivalents are still missing. In this work, we used specific FISH probes for the identification of 12 chicken lampbrush chromosomes formed by GGA17-28. Our observations on chromomere and lateral loop arrangement and chiasma position allowed us to construct the respective cytogenetic maps for these microchromosomes. For the 10 smallest chicken microchromosomes, GGA29-38, no individual molecular tags are available, yet they can be collectively marked using the PO41 repeat. The reported results contribute to building of working cytogenetic maps of the chicken karyotype.

1.
Andreozzi L, Federico C, Motta S, Saccone S, Sazanova AL, et al: Compositional mapping of chicken chromosomes and identification of the gene-richest regions. Chromosome Res 9:521-532 (2001).
2.
Auer H, Mayr B, Lambrou M, Schleger W: An extended chicken karyotype, including the NOR chromosome. Cytogenet Cell Genet 45:218-221 (1987).
3.
Burt DW: Origin and evolution of avian microchromosomes. Cytogenet Genome Res 96:97-112 (2002).
4.
Callan HG: Lampbrush Chromosomes (Springer-Verlag, Berlin 1986).
5.
Chelysheva LA, Solovei IV, Rodionov AV, Yakovlev AF, Gaginskaya ER: The lampbrush chromosomes of the chicken. Cytological maps of the macrobivalents (in Russian). Tsitologiia 32:303-316 (1990).
6.
Derjusheva S, Kurganova A, Krasikova A, Saifitdinova A, Habermann FA, Gaginskaya E: Precise identification of chicken chromosomes in the lampbrush form using chromosome painting probes. Chromosome Res 11:749-757 (2003).
7.
Deryusheva S, Krasikova A, Kulicova T, Gaginskaya E: Tandem 41-bp repeats in chicken and Japanese quail genomes: FISH mapping and transcription analysis on lampbrush chromosomes. Chromosoma 116:519-530 (2007).
8.
Douaud M, Feve K, Gerus M, Fillon V, Bardes S, et al: Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics 9:129 (2008).
9.
Elferink MG, van As P, Veenendaal T, Crooijmans RP, Groenen MA: Regional differences in recombination hotspots between two chicken populations. BMC Genet 11:11 (2010).
10.
Epplen JT, Leipoldt M, Engel W, Schmidtke J: DNA sequence organisation in avian genomes. Chromosoma 69:307-321 (1978).
11.
Farré M, Micheletti D, Ruiz-Herrera A: Recombination rates and genomic shuffling in human and chimpanzee - a new twist in the chromosomal speciation theory. Mol Biol Evol 30:853-864 (2013).
12.
Fillon V, Morisson M, Zoorob R, Auffray C, Douaire M, et al: Identification of 16 chicken microchromosomes by molecular markers using two-colour fluorescence in situ hybridization (FISH). Chromosome Res 6:307-313 (1998).
13.
Fillon V, Vignoles M, Crooijmans RP, Groenen MA, Zoorob R, Vignal A: FISH mapping of 57 BAC clones reveals strong conservation of synteny between Galliformes and Anseriformes. Anim Genet 38:303-307 (2007).
14.
Gaginskaya E, Kulikova T, Krasikova A: Avian lampbrush chromosomes: a powerful tool for exploration of genome expression. Cytogenet Genome Res 124:251-267 (2009).
15.
Galkina S, Lukina N, Zakharova K, Rodionov AV: Interstitial (TTAGGG)(n) sequences are not hot spots of recombination in the chicken lampbrush macrochromosomes 1-3. Chromosome Res 13:551-557 (2005).
16.
Galkina S, Deryusheva S, Fillon V, Vignal A, Crooijmans R, et al: FISH on avian lampbrush chromosomes produces higher resolution gene mapping. Genetica 128:241-251 (2006).
17.
Godiska R, Mead D, Dhodda V, Wu C, Hochstein R, et al: Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli. Nucleic Acids Res 38:e88 (2010).
18.
Griffin DK, Haberman F, Masabanda J, O'Brien P, Bagga M, et al: Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome. Cytogenet Cell Genet 87:278-281 (1999).
19.
Groenen MA, Wahlberg P, Foglio M, Cheng HH, Megens HJ, et al: A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res 19:510-519 (2009).
20.
Hori T, Susuki Y, Solovei I, Saitoh Y, Hutchison N, et al: Characterization of DNA sequences constituting the terminal heterochromatin of the chicken Z chromosome. Chromosome Res 4:411-426 (1996).
21.
International Chicken Genome Sequencing Consortium: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-716 (2004).
22.
Kasai F, O'Brien PC, Ferguson-Smith MA: Reassessment of genome size in turtle and crocodile based on chromosome measurement by flow karyotyping: close similarity to chicken. Biol Lett 8:631-635 (2012).
23.
Krasikova A, Deryusheva S, Galkina S, Kurganova A, Evteev A, Gaginskaya E: On the positions of centromeres in chicken lampbrush chromosomes. Chromosome Res 14:777-789 (2006).
24.
Krasikova A, Fukagawa T, Zlotina A: High-resolution mapping and transcriptional activity analysis of chicken centromere sequences on giant lampbrush chromosomes. Chromosome Res 20:995-1008 (2012).
25.
Kulikova T, Chervyakova D, Zlotina A, Krasikova A, Gaginskaya E: Giant poly(A)-rich RNP aggregates form at terminal regions of avian lampbrush chromosomes. Chromosoma 125:709-724 (2016).
26.
Masabanda JS, Burt DW, O'Brien PC, Vignal A, Fillon V, et al: Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics 166:1367-1373 (2004).
27.
Mason AS, Fulton JE, Hocking PM, Burt DW: A new look at the LTR retrotransposon content of the chicken genome. BMC Genomics 17:688 (2016).
28.
Matzke M, Varga F, Berger H, Schernthaner J, Schweizer D, et al: A 41-42 bp tandemly repeated sequence isolated from nuclear envelopes of chicken erythrocytes is located predominantly on microchromosomes. Chromosoma 99:131-137 (1990).
29.
Matzke AJM, Varga F, Gruendler P, Unfried I, Berger H, et al: Characterization of a new repetitive sequence that is enriched on microchromosomes of turkey. Chromosoma 102:9-14 (1992).
30.
McQueen HA, Fantes J, Cross SH, Clark VH, Archibald AL, Bird AP: CpG islands of chicken are concentrated on microchromosomes. Nat Genet 12:321-324 (1996).
31.
McQueen HA, Siriaco G, Bird AP: Chicken microchromosomes are hyperacetylated, early replicating, and gene rich. Genome Res 8:621-630 (1998).
32.
Mendonça MAC, Carvalho CR, Clarindo WR: DNA amount of chicken chromosomes resolved by image cytometry. Caryologia 69:201-206 (2016).
33.
Nam K, Ellegren H: Recombination drives vertebrate genome contraction. PLoS Genet 8:e1002680 (2012).
34.
Ogawa A, Solovei I, Hutchison N, Saitoh Y, Ikeda JE, et al: Molecular characterization and cytological mapping of a non-repetitive DNA sequence region from the W chromosome of chicken and its use as a universal probe for sexing Carinatae birds. Chromosome Res 5:93-101 (1997).
35.
Pengelly RJ, Gheyas AA, Kuo R, Mossotto E, Seaby EG, et al: Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium. Heredity (Edinb) 117:375-382 (2016).
36.
Pichugin AM, Galkina SA, Potekhin AA, Punina EO, Rautian MS, Rodionov AV: Estimation of the minimal size of chicken Gallus gallus domesticus microchromosomes via pulsed-field electrophoresis. Russ J Genet 37:535-538 (2001).
37.
Pigozzi MI: Distribution of MLH1 foci on the synaptonemal complexes of chicken oocytes. Cytogenet Cell Genet 95:129-133 (2001).
38.
Rodionov AV: Micro vs. macro: structural-functional organization of avian micro- and macrochromosomes (in Russian). Genetika 32:597-608 (1996).
39.
Rodionov AV, Myakoshina YA, Chelysheva LA, Solovei IV, Gaginskaya ER: Chiasmata on lampbrush chromosomes of Gallus gallus domesticus. Cytogenetic investigations of recombination frequency and linkage group length (in Russian). Genetika 28:53-63 (1992a).
40.
Rodionov AV, Chelysheva LA, Solovei IV, Miakoshina IA: Chiasma distribution in the lampbrush chromosomes of the chicken Gallus gallus domesticus: hot spots of recombination and their possible role in proper disjunction of homologous chromosomes at the first meiotic division (in Russian). Genetika 28:151-160 (1992b).
41.
Rodionov AV, Lukina NA, Galkina SA, Solovei I, Saccone S: Crossing over in chicken oogenesis: cytological and chiasma-based genetic maps of the chicken lampbrush chromosome 1. J Hered 93:125-129 (2002).
42.
Romanov MN, Daniels LM, Dodgson JB, Delany ME: Integration of the cytogenetic and physical maps of chicken chromosome 17. Chromosome Res 13:215-222 (2005).
43.
Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, et al: Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics 15:1060 (2014).
44.
Saifitdinova A, Derjusheva S, Krasikova A, Gaginskaya E: Lampbrush chromosomes of the chaffinch (Fringilla coelebs L.). Chromosome Res 11:99-113 (2003).
45.
Schmid M, Nanda I, Hoehn H, Schartl M, Haaf T, et al: Second report on chicken genes and chromosomes 2005. Cytogenet Genome Res 109:415-479 (2005).
46.
Skinner BM, Robertson LB, Tempest HG, Langley EJ, Ioannou D, et al: Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis. BMC Genomics 10:357 (2009).
47.
Smith J, Bruley CK, Paton IR, Dunn I, Jones CT, et al: Differences in gene density on the chicken macrochromosomes and microchromosomes. Anim Genet 31:96-103 (2000).
48.
Solinhac R, Leroux S, Galkina S, Chazara O, Feve K, et al: Integrative mapping analysis of chicken microchromosome 16 organization. BMC Genomics 11:616 (2010).
49.
Solovei I, Gaginskaya E, Hutchison N, Macgregor H: Avian sex chromosomes in the lampbrush form: ZW lampbrush bivalents from six species of bird. Chromosome Res 1:153-166 (1993).
50.
Solovei I, Gaginskaya ER, Macgregor HC: The arrangement and transcription of telomere DNA sequences at the ends of lampbrush chromosomes of birds. Chromosome Res 2:460-470 (1994).
51.
Solovei I, Macgregor H, Gaginskaya E: Single stranded nucleic acid binding structures on chicken lampbrush chromosomes. J Cell Sci 108:1391-1396 (1995).
52.
Solovei I, Joffe B, Gaginskaya E, Macgregor HC: Transcription on lampbrush chromosomes of a centromerically localized highly repeated DNA in pigeon (Columba) relates to sequence arrangement. Chromosome Res 4:588-603 (1996).
53.
Stefos K, Arrighi F: Repetitive DNA of Gallus domesticus and its cytological locations. Exp Cell Res 83:9-14 (1974).
54.
Tanaka K, Suzuki T, Nojiri T, Yamagata T, Namikawa T, et al: Characterization and chromosomal distribution of a novel satellite DNA sequence of Japanese quail (Coturnix coturnix japonica). J Hered 91:412-415 (2000).
55.
Telenius H, Pelmear AH, Tunnacliffe A, Carter NP, Behmel A, et al: Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4:257-263 (1992).
56.
Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, et al: A new chicken genome assembly provides insight into avian genome structure. G3 (Bethesda) 7:109-117 (2017).
57.
Wicker T, Robertson JS, Schulze SR, Feltus FA, Magrini V, et al: The repetitive landscape of the chicken genome. Genome Res 15:126-136 (2005).
58.
Zlotina A, Galkina S, Krasikova A, Crooijmans RP, Groenen MA, et al: Precise centromere positioning on chicken chromosome 3. Cytogenet Genome Res 129:310-313 (2010).
59.
Zlotina A, Galkina S, Krasikova A, Crooijmans RP, Groenen MA, et al: Centromere positions in chicken and Japanese quail chromosomes: de novo centromere formation versus pericentric inversions. Chromosome Res 20:1017-1032 (2012).
Copyright / Drug Dosage / Disclaimer
Copyright: All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means, electronic or mechanical, including photocopying, recording, microcopying, or by any information storage and retrieval system, without permission in writing from the publisher.
Drug Dosage: The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any changes in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug.
Disclaimer: The statements, opinions and data contained in this publication are solely those of the individual authors and contributors and not of the publishers and the editor(s). The appearance of advertisements or/and product references in the publication is not a warranty, endorsement, or approval of the products or services advertised or of their effectiveness, quality or safety. The publisher and the editor(s) disclaim responsibility for any injury to persons or property resulting from any ideas, methods, instructions or products referred to in the content or advertisements.
You do not currently have access to this content.